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Molecular Tools Page

Virology

NCV Nebraska Center for Virology . Wisconsin IMV . HPV Database . ASV . All the Virology
Virology Resources Webpage

DNA and Protein Sequence Databases

Nucleotide sequence search at NCBI.
Protein sequence search at NCBI.
blastn . blastp . tblastn . tblastx
pairwise blast
short nucleotide blast
short protein blast
PSI-BLAST
DNA Data Bank of Japan
Human Genome Database at UC-Santa Cruz
Human Genome Database at NIH

Literature Searches and Journals

PubMed Literature Search
Web of Science Index
Journal of Virology
Genes & Development . Nature . Science . MCB

3D Structural Analysis

RSCB PDB Database of X-ray Crystal Structures
Rasmol Structure Viewing Software
Rasmol - Another Software Source
RSCB Software
3D-PSSM Protein Folding Analsis-web-based software

Motif Analysis

Meme Discover motifs
MAST Search with motifs.
Conserved Domain Database Pfam + SMART + NCBI.
Pfam Search Pfam HMMs
Simple Modular Architecture Research Tool HMMer search tool at EMBL.

Bioinformatic Analysis Tools

Exon-Intron Database Analysis Tools.
Biology WorkBench integrated tools.
Dialign Sequence Alignment at Universitat Bielefeld.
AMAS Server Multiple Sequence Alignment
Expasy Proteomics Analysis Server
GCG DNA Analysis Server

Yeast Molecular Biology

SGD Database Stanford
SGD Global Gene Hunter Stanford
Yeast Tranformation Protcol-TRAFO